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Table 5 Biological pathways associated with differentially expressed genes between tabw2 and control mice through KEGG pathway using DAVID

From: Gene expression profiles of a mouse congenic strain carrying an obesity susceptibility QTL under obesigenic diets

Term

KEGG ID

Count

EASE score

Gene

Adipose tissue

 ErbB signaling pathway

mmu04012

10

0.0038

Gabl, Akt3, Mapk9, Camk2g, Pak4, Bad, Cdknla, Map2k7, Gsk3b, Camk2d

 Pyruvate metabolism

mmu00620

6

0.016

Acaca, Akr1b3, Acat2, Acacb, Dlat, Acss2

 Propanoate metabolism

mmu00640

5

0.022

Acaca, Acat2, Acacb, Mut, Acss2

 Prostate cancer

mmu05215

8

0.038

Tcf3 , Igf1, Akt3, Igflr, Bad, Cdkn1a, Pdgfc, Gsk3b

 Melanoma

mmu05218

7

0.041

Igf1, Akt3, Igflr, Bad, Fgf13, Cdknla, Pdgfc

 Glioma

mmu05214

6

0.074

Igfl, Akt3, Igf1r, Camk2g, Cdkn1a, Camk2d

 Olfactory transduction

mmu04740

4

0.080

Clca1, Clca2, Camk2g, Camk2d

 Wnt signaling pathway

mmu04310

10

0.082

Tcf3 , Ccnd2 , Mapk9, Camk2g, Nfatc3, Daaml, Lrp6 , Sfrp5, Gsk3b, Camk2d

 Focal adhesion

mmu04510

12

0.090

Itgal, Thbsl, Igfl, Akt3, Ccnd2, Igflr, Mapk9, Pak4, Bad, Pdgfc, Itgb5, Gsk3b

Liver

 Long-term potentiation

mmu04720

10

0.019

Camk2b, Ppp3c, Rps6ka2, Gnaq, Rafl , Prkacb, Ppplrl2a, Braf Itpr2, Crebbp

 Fatty acid metabolism

mmu00071

8

0.019

Gcdh, Cyp4al0, Hsdl7b4, Ehhadh, Acaala, Cyp4al4, Acaalb, Hadh

 Wnt signaling pathway

mmu04310

17

0.025

Nlk, Camk2b, Ppp3ca, Mapk8, Prkacb, MapklO, Ccnd2 , Tcf7l2, Lrp6 , Fzd7, Wnt5b , Csnk2a2, Mmp7, Ruvbll, Nfatc3, Nfat5, Crebbp

 Caprolactam degradation

mmu00930

4

0.038

Sirt5, Hsdl 7b4, Ehhadh, Hadh

 Fatty acid biosynthesis

mmu00061

3

0.053

Oxsm, Acaca, Mcat

 Geraniol degradation

mmu00281

3

0.053

Hsdl7b4, Acaalb, Hadh

 Prostate cancer

mmu05215

11

0.054

Creb3l2, Igfl, Raf1 , Chuk, Cdknlb, Sos2, Braf, Pten, Nfkbl, Tcf7l2, Crebbp

 Lysine degradation

mmu00310

7

0.057

Gcdh, Ogdh, Hsdl 7b4, Ehhadh, Aadat, Hadh, Aass

 Gap junction

mmu04540

11

0.065

Gnaq, Raf1 , Prkacb, Sos2, Tubb2a, Itpr2, Gjal, Prkgl, Htr2b, Tubb2b, Gnai3

 Acute myeloid leukemia

mmu05221

8

0.074

Sfpil, Raf1 , Chuk, Sos2, Braf, Nfkbl, Tcf7l2, Rps6kbl

 Melanogenesis

mmu04916

11

0.087

Camk2b, Ednrb, Creb3l2, Gnaq, Raf1 , Prkacb, Tcf7l2, Fzd7, Wnt5b , Crebbp, Gnai3

 MAPK signaling pathway

mmu04010

23

0.092

Map3kl, Nlk, Gadd45a, Ppp3ca, Mapk8, Raf1 , Sos2, MapklO, Prkacb, Chuk, Braf, Cacnb3, Stk4, Elk4, Rps6ka2, Dusp3, Cdl4, Rasal, Mapkl2, Nfkbl, Rapgef2, Map3k7ip2, Fgfr3

 Citrate cycle (TCA cycle)

mmu00020

5

0.094

Pcx, Ogdh, Sdhd, Idh3a, Aco1

  1. Genes in bold are in the congenic interval
  2. DAVID, Database for Annotation, Visualization and Integration Discovery Bioinformatics Resources 2008 (http://david.abcc.ncifcrf.gov/); KEGG, Kyoto Encyclopedia of Genes and Genomes; Term, enriched terms (pathways) associated with the gene list; Count, the number of genes involved in the term; EASE (Expression Analysis Systematic Explorer) score, Modified Fisher Exact P-value (smaller means more enriched)