Table 4 Protein distribution by COG functional categories of genomes from bifidobacteria and other groups of human intestinal bacteria (October 2010)
COG description | % in Bifidobacterium a | % in Bacteroides a | % in Lactobacillus a | % in Actinobacteriaa | % in Bacteriaa |
|---|---|---|---|---|---|
Translation | 6.3993 | 3.4093 | 6.9565 | 3.371 | 4.2968 |
RNA processing nd modification | 0.0758 | 0 | 0 | 0.0229 | 0.0148 |
Transcription | 6.5036 | 4.6561 | 7.343 | 7.1218 | 5.9643 |
Replication, recombination and repair | 6.5131 | 4.4224 | 6.1353 | 4.3295 | 4.8261 |
Chromatin structure and dynamics | 0 | 0.0195 | 0 | 0.0104 | 0.0269 |
Cell cycle control, mitosis and meiosis | 1.204 | 0.565 | 1.256 | 0.6397 | 0.765 |
Nuclear structure | 0 | 0 | 0 | 0 | 0 |
Defense mechanisms | 2.4649 | 2.143 | 2.2222 | 1.1668 | 1.259 |
Signal transduction mechanisms | 3.2328 | 3.4288 | 2.7536 | 3.2459 | 3.9952 |
Cell wall/membrane biogenesis | 3.6405 | 6.5848 | 4.3961 | 2.885 | 4.3931 |
Cell motility | 0.0948 | 0.0584 | 0.2899 | 0.1722 | 1.4575 |
Cytoskeleton | 0.0095 | 0 | 0 | 0.0145 | 0.0116 |
Extracellular structures | 0 | 0 | 0 | 0 | 0.0154 |
Intracellular trafficking and secretion | 0.7774 | 1.4027 | 1.0628 | 0.6363 | 1.7757 |
Posttranslational modification, protein turnover, chaperones | 2.5218 | 1.9287 | 2.5121 | 2.2143 | 2.929 |
Energy production and conversion | 2.3606 | 3.1366 | 3.6232 | 4.8755 | 4.8217 |
Carbohydrate transport and metabolism | 8.7505 | 5.1822 | 8.8889 | 5.1296 | 4.9545 |
Amino acid transport and metabolism | 9.5942 | 4.5782 | 7.4396 | 6.9266 | 7.2726 |
Nucleotide transport and metabolism | 3.1191 | 1.5196 | 3.6232 | 1.6305 | 1.7769 |
Coenzyme transport and metabolism | 2.3132 | 2.5716 | 1.401 | 2.8294 | 2.97 |
Lipid transport and metabolism | 1.8771 | 1.5391 | 1.7391 | 5.0221 | 2.8606 |
Inorganic ion transport and metabolism | 4.3989 | 4.8704 | 4.2029 | 4.3659 | 4.5898 |
Secondary metabolites biosynthesis, transport and catabolism | 0.493 | 0.8572 | 0.5797 | 4.5415 | 2.2675 |
General function prediction only | 10.0588 | 8.5525 | 10.5797 | 11.4499 | 10.4609 |
Function unknown | 4.8066 | 4.0327 | 6.9082 | 4.8 | 6.14 |
Not in COGsb | 18.7903 | 34.5412 | 16.087 | 22.5988 | 20.1551 |