From: Intestinal microbiota in human health and disease: the impact of probiotics
Study material | Population | Analytical methods | References |
---|---|---|---|
Faeces (3 time points) | 27 IBS patients 22 Healthy individuals | qPCR | Malinen et al. (2005)* |
Faeces (3 time points) | 26 IBS patients 25 Healthy individuals | Conventional culturing DGGE Clone library sequencing (16S) | Mättö et al. (2005)* |
Biopsies: inflamed and non-inflamed tissue (ileum, ascending/sigmoid colon) | 20 CD patients 20 UC patients 20 Self-limiting colitis patients 20 IBS patients 20 Healthy individuals | FISH | Swidsinski et al. (2005) |
Faeces (2 time points) | 16 IBS patients 16 Healthy individuals | DGGE TRAC | Maukonen et al. (2006)* |
Faeces | 24 IBS patients 23 Healthy individuals | G+C based profiling Clone library sequencing (16S) qPCR | Kassinen et al. (2007)* |
Duodenal biopsies Faeces | 41 IBS patients 26 Healthy individuals | FISH qPCR | Kerckhoffs et al. (2009)# |
Faeces | 10 (+2) IBS (only IBS-D) 23 Healthy individuals | G+C based profiling Clone library sequencing (16S) qPCR | Krogius–Kurikka et al. (2009)* |
Faeces (3 time points) | 20 IBS patients 15 Healthy individuals | qPCR | Lyra et al. (2009)* |
Colonic biopsies Faeces | 10 IBS patients (only IBS-D) 10 Healthy individuals | Conventional culturing qPCR | Carroll et al. (2010) |
Colonic biopsies Faeces | 47 IBS patients 33 Healthy individuals | DGGE | Codling et al. (2010) |
Duodenal biopsies Faeces | 37 IBS patients 20 Healthy individuals | DGGE Clone library sequencing (16S) qPCR | Kerckhoffs et al. (2010)# |
Faeces | 44 IBS patients | qPCR | Malinen et al. (2010)* |
Faeces | 26 IBS patients 26 Healthy individuals | Conventional culturing qPCR HPLC | Tana et al. (2010) |