Table 3 The genes selected by CovProc, LASSO, ELASTIC NET and GA methods for TIMP-1
CovProc | LASSO | ELASTIC NET | GA | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Gene | f | r | Gene | f | r | Gene | f | r | Gene | f | r |
Serpina3n | 10 | 0.862 | Serpina3n | 10 | 0.862 | Serpina3n | 9 | 0.862 | Serpina3n | 7 | 0.862 |
Lcn2 | 10 | 0.839 | Apcs | 8 | 0.807 | Apcs | 7 | 0.807 | Antxr2 | 0 | 0.581 |
Serpina10 | 10 | 0.839 | Cobl | 8 | 0.781 | Cpb2 | 7 | 0.784 | Keg1 | 0 | −0.524 |
Saa2 | 10 | 0.828 | B3galt1 | 8 | 0.780 | Cobl | 7 | 0.781 | Cul1 | 0 | 0.462 |
Fgl1 | 10 | 0.827 | Cpb2 | 6 | 0.784 | B3galt1 | 6 | 0.780 | Pscdbp | 0 | 0.414 |
Itih4 | 10 | 0.821 | Hapln4 | 5 | 0.709 | Hapln4 | 3 | 0.709 | Ugcgl1 | 0 | 0.401 |
Lbp | 10 | 0.820 | Cyb561 | 3 | 0.819 | Spp1 | 3 | 0.631 | LOC634731 | 0 | 0.395 |
Cyb561 | 10 | 0.819 | Cxcl1 | 3 | 0.686 | Arl6ip5 | 3 | 0.629 | Ica1 | 0 | 0.367 |
Cpne8 | 10 | 0.813 | Gm527 | 3 | 0.653 | Cxcl1 | 2 | 0.686 | Pilra | 1 | 0.364 |
Apcs | 10 | 0.807 | 2200001I15Rik | 3 | 0.640 | Gm527 | 2 | 0.653 | Nudt18 | 0 | 0.338 |
Tnfrsf1a | 10 | 0.805 | Spp1 | 3 | 0.631 | 2200001I15Rik | 2 | 0.640 | Unk | 1 | 0.329 |
Slc41a2 | 9 | 0.813 | Arl6ip5 | 3 | 0.629 | Serpina10 | 1 | 0.839 | Cyp17a1 | 0 | 0.299 |
Itih3 | 9 | 0.790 | Fgl1 | 2 | 0.827 | Cyb561 | 1 | 0.819 | Pdia6 | 0 | 0.296 |
Tmem176a | 9 | 0.785 | Acp6 | 2 | −0.554 | Tnfrsf1a | 1 | 0.805 | Rap2b | 0 | 0.248 |
Stat3 | 9 | 0.784 | Serpina10 | 1 | 0.839 | Tmem176a | 1 | 0.785 | Pqlc2 | 0 | 0.236 |
Cpb2 | 9 | 0.784 | Itih4 | 1 | 0.821 | Mt2 | 1 | 0.784 | Tlr8 | 0 | 0.196 |
Mt2 | 9 | 0.784 | Tnfrsf1a | 1 | 0.805 | Abhd14b | 1 | −0.693 | Tbc1d13 | 0 | −0.176 |
Lrg1 | 9 | 0.783 | Tmem176a | 1 | 0.785 | Polg2 | 1 | −0.630 | Cxxc5 | 0 | −0.145 |
Cobl | 9 | 0.781 | Litaf | 1 | 0.760 | Edg5 | 1 | 0.585 | 1700006J14Rik | 0 | −0.145 |
B3galt1 | 9 | 0.780 | Abhd14b | 1 | −0.693 | Acp6 | 1 | −0.554 | NA | 0 | 0.132 |
Ifitm2 | 9 | 0.776 | Polg2 | 1 | −0.630 | Lcn2 | 0 | 0.839 | Itfg1 | 0 | 0.131 |
Orm2 | 8 | 0.790 | Edg5 | 1 | 0.585 | Saa2 | 0 | 0.828 | Fstl1 | 0 | 0.098 |
Zbp1 | 8 | 0.766 | Lcn2 | 0 | 0.839 | Fgl1 | 0 | 0.827 | AI854517 | 0 | 0.081 |
Orm1 | 8 | 0.763 | Saa2 | 0 | 0.828 | Itih4 | 0 | 0.821 | Ccdc79 | 0 | −0.036 |
Litaf | 8 | 0.760 | Lbp | 0 | 0.820 | Lbp | 0 | 0.820 | 5730410I19Rik | 0 | −0.029 |
Hp | 7 | 0.765 | Cpne8 | 0 | 0.813 | Cpne8 | 0 | 0.813 | Dync2li1 | 1 | 0.015 |
21 | 148 | 9 | 22 | 9 | 20 | 26 | 245 | ||||