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Table 2 Preliminary genes gathered from KEGG, WikiPathways, Gene Ontology, and text mining from journals

From: Concept mapping One-Carbon Metabolism to model future ontologies for nutrient–gene–phenotype interactions

KEGG: “One-Carbon Pool by Folate”

WikiPathways: “One-Carbon Metabolism”

Gene Ontology: “One-Carbon Metabolic Process” curation

Literature-mined genes absent in KEGG, WikiPathway, and Gene Ontology databases

ATIC

ATIC

 

AMN

 

AHCY

AHCY

BHMT2

  

AHCYL1

CBS

  

AHCYL2

CELF1

ALDH1L1 (aka FTHFD)

ALDH1L1 (aka FTHFD)

ALDH1L1 (aka FTHFD)

CTH

ALDH1L2

 

ALDH1L2

CUBN

AMT

AMT

 

DMGDH

 

BHMT

 

DMNT2

  

CA1

DPYD

  

CA12

FOLR1

  

CA13

FOLR2

  

CA2

FOLR3

  

CA3

FTH1

  

CA4

FUT2

  

CA5A

GCSH

  

CA5B

GGH

  

CA6

GLDC

  

CA7

HSPA8

  

CA8

LMBRD1

  

CA9

MARS

DHFR

DHFR

DHFR

MBD2

DHFRL1

 

DHFRL1

MGMT

 

DNMT1

 

MLH1

 

DNMT3a

 

MRP1

 

DNMT3b

 

MSH2

 

FOLH1

 

NOS3

  

FPGS

PCFT

FTCD

FTCD

FTCD

SARDH

GART

GART

 

SLC19A1

  

GNMT

SLC19A2

 

MAT1A

MAT1A

SLC19A3

  

MAT2A

SLC25A32

 

MAT2B

MAT2B

SLC46A1

MTFMT

MTFMT

 

TCBLR

MTHFD1

MTHFD1

MTHFD1

TCN1

MTHFD1L

MTHFD1L

MTHFD1L

UBE2I

MTHFD2

MTHFD2

MTHFD2

UBE2 N

MTHFD2L

 

MTHFD2L

 

MTHFR.

MTHFR

MTHFR

 

MTHFS

MTHFS

  

MTR (aka MS)

MTR (aka MS)

  
 

MTRR

  

SHMT1

SHMT1

SHMT1

 

SHMT2

SHMT2

SHMT2

 
 

TCN2

  

TYMS

TYMS

  
  1. This is a comprehensive list of all genes gathered throughout literature and pathway mining