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Table 1 Oligonucleotide primers used for quantitative real-time PCR

From: Low activity of LSD1 elicits a pro-inflammatory gene expression profile in riboflavin-deficient human T Lymphoma Jurkat cells

Genea

Sequence (5′–3′)

F/Rb

Template

GAPDH

TCCACTGGCGTCTTCACC

F

cDNA

GGCAGAGATGATGACCCTTT

R

GAPDH

ATGACAAGCATGAGGCAGAG

F

gDNA

CAACCAGGACCGTTAACCCTTTCT

R

IL-1α

ACAAAAGGCGAAGAAGACTGA

F

cDNA

GGAACTTTGGCCATCTTGAC

R

IL-1α (−319 to −56)

CCAACTCACACAAGCTGCTTT

F

gDNA

GGTGGTAGAACACCAGACTCTT

R

IL-1α (+128 to +416)

CTTCTTCTACAGAAGACACACCTT

F

gDNA

CTGAAGAGGGAAGTTTGCTTGATT

R

IL-1β

CTGTCCTGCGTGTTGAAAGA

F

cDNA

TTGGGTAATTTTTGGGATCTACA

R

IL-1β (−235 to −67)

ATATTTGCATGGTGATACATTTGC

F

gDNA

CTCTGTTGAATACCTGATTTCACAA

R

IL-1β (+127 to +338)

GCCTCTTTGTGTGTATGCATATT

F

gDNA

GAGAGCTGGAGCAGAGGCTT

R

IL-6

TCCAGAACAGATTTGAGAGTAGTG

F

cDNA

GCATTTGTGGTTGGGTCAGG

R

IL-6 (−279 to −93)

CTTCGTGCATGACTTCAGCTTT

F

gDNA

GATTGTGCAATGTGACGTCCTTT

R

IL-6 (+132 to +398)

CACAAGTAAGTGCAGGAAATCCTT

F

gDNA

CGGCTACATCTTTGGAATCTT

R

LSD1

ACCACAACAGACCCAGAAGG

F

cDNA

GGTGCTTCTAATTGTTGGAGAG

R

TNF-α

GCTCTTCTGCCTGCTGCACTT

F

cDNA

GATGGCACCACCAGCTGGTT

R

TNF-α (−399 to −192)

CCTGCATCCTGTCTGGAAGTT

F

gDNA

GGGACACACAAGCATCAAGGAT

R

TNF-α (+103 to +374)

GCTGCCAGGCAGGTTCTCTT

F

gDNA

GGCCAGGCACTCACCTCTT

R

  1. aGenbank entries: GAPDH = Homo sapiens glyceraldehyde-3-phosphate dehydrogenase (NM_002046.4 for complementary DNA, NG_007073.2 for genomic DNA); IL-1α = Homo sapiens interleukin-1 alpha (NM_000575.3 for complementary DNA, NG_008850.1 for genomic DNA); IL-1β = Homo sapiens interleukin-1 beta (NM_000576.2 for complementary DNA, NG_008851.1 for genomic DNA); IL-6 = Homo sapiens interleukin-6 (NM_ NM_000600.3 for complementary DNA, NG_011640.1 for genomic DNA); LSD1 = Homo sapiens lysine (K)-specific demethylase 1 (NM_001009999.2); TNF-α = Homo sapiens tumor necrosis factor-alpha (NM_000594.3 for complementary DNA, NG_007462.1 for genomic DNA)
  2. b cDNA complementary DNA (for gene expression analysis), F forward, gDNA genomic DNA (for ChIP assays), R reverse