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Table 3 Comparison of NFKB1-related genes with treatments

From: The major pathway by which polymeric formula reduces inflammation in intestinal epithelial cells: a microarray-based analysis

Gene

Affymetrix probe ID

TNF versus untreated

PF versus TNF

PF versus untreated

P_val

FC

P_val

FC

P_val

FC

Activation of NF-κB

 NFKB1

11717542_a_at

6.7E−06

2.77

8.6E−04

−1.54

1.6E−04*

1.8

 NFKBIA

11757894_x_at

2.1E−03

3.7

2.7E−01*

−1.36

7.6E−03*

2.71

 NFKBIA

11745878_x_at

2.5E−03

3.26

2.3E−01*

−1.37

1.1E−02*

2.37

 NFKBIA

11744000_a_at

2.6E−03

3.54

2.4E−01*

−1.4

1.1E−02*

2.53

 NFKBIE

11743007_at

3.1E−05

4.07

5.2E−02*

−1.36

1.2E−04

3

 TNF

11721577_at

1.1E−05

4.77

1.0E−03

−2.01

3.3E−04

2.37

 TNFRSF10B

11719681_a_at

9.1E−08

2.72

4.9E−01*

−1.02

1.1E−07

2.65

 TNFRSF10B

11753075_a_at

1.7E−06

1.92

9.4E−02*

1.07

9.2E−07

2.06

Positive regulation of IkB kinase/NF-κB cascade

 IKBKE

11720956_a_at

4.6E−05

2.29

3.1E−03*

−1.46

1.3E−03*

1.57

 IKBKE

11720957_a_at

4.1E−06

2.48

8.1E−05

−1.72

7.0E−04*

1.44

 TNFSF10

11743730_at

1.6E−07

3.29

1.3E−05

−1.76

7.4E−06*

1.87

 TNFSF10

11747952_x_at

7.8E−10

3.71

8.4E−08

−1.82

3.0E−08

2.04

 TNFAIP3

11718940_a_at

2.5E−05

3.82

3.5E−03*

−1.71

4.5E−04

2.23

 TNFAIP3

11718939_s_at

3.8E−05

7.8

2.0E−02*

−1.82

2.7E−04

4.27

 TRAF2

11754185_a_at

1.5E−05

1.74

1.3E−04

−1.46

7.5E−03*

1.19

NF-κB-responsive genes

 ICAM1

11747499_a_at

8.3E−04

2.13

4.7E−02*

−1.36

1.0E−02*

1.57

 ICAM1

11732999_a_at

2.6E−05

4.15

6.9E−03*

−1.65

3.0E−04

2.52

 ICAM1

11733000_at

9.4E−05

4.72

3.4E−03*

−2.2

4.0E−03*

2.14

 IL-8

11754026_a_at

9.3E−05

37.31

4.0E−01*

−1.43

1.7E−04

26.15

 IL-8

11763226_x_at

1.3E−04

30.75

3.9E−01*

−1.44

2.4E−04

21.31

 IL-8

11718841_s_at

5.9E−07

40.96

9.4E−02*

−1.4

1.0E−06

29.21

Other factors

 FOS

11749291_a_at

3.0E−04

−2.83

1.2E−03

2.23

1.4E−01*

−1.27

 FOS

11734659_a_at

1.4E−03

−2.34

4.2E−03*

1.98

3.1E−01*

−1.18

 FOS

11749852_s_at

9.5E−04

−2.35

4.2E−03*

1.89

1.8E−01*

−1.24

 RELB

11722141_at

1.3E−06

4.23

1.6E−03

−1.51

9.6E−06

2.8

 IL-1A

11725198_at

7.1E−05

1.92

3.3E−02*

−1.2

4.6E−04*

1.59

 LTB

11739658_a_at

6.6E−05

1.99

1.6E−03*

−1.47

4.8E−03*

1.36

 LTB

11739657_a_at

9.1E−05

6.8

3.4E−03*

−2.63

3.8E−03*

2.58

 NFAT5

11738447_a_at

8.5E−04

−2.07

1.0E−02*

1.55

5.1E−02*

−1.33

 NFAT5

11717466_a_at

9.2E−03

−3.62

1.0E−01*

1.93

1.2E−01*

−1.87

 TNIP1

11750133_x_at

1.0E−03

1.78

5.1E−03*

−1.52

1.5E−01*

1.17

 TNIP1

11715898_a_at

2.9E−04

1.86

1.7E−03

−1.56

7.8E−02*

1.19

 TNIP1

11744745_a_at

3.8E−03

1.58

8.1E−03*

−1.48

5.2E−01*

1.07

 TNIP1

11744746_x_at

3.6E−03

1.54

2.8E−03*

−1.57

8.2E−01*

−1.02

 ROCK1

11739450_x_at

6.7E−05

−1.94

1.7E−02*

1.25

6.3E−04*

−1.55

  1. P values which are not statistically significant at an FDR < 0.05