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Table 6 Sample sets in derived EUR, EAS and AFR geographic groups

From: Distribution of variants in multiple vitamin D-related loci (DHCR7/NADSYN1, GC, CYP2R1, CYP11A1, CYP24A1, VDR, RXRα and RXRγ) vary between European, East-Asian and Sub-Saharan African-ancestry populations

Europeans (EUR)

ALFRED

Sample set

n

Latitude^

Sample ID#

Data source*

 Danes

51

55.0–58.0° N

SA000007H

[35]

 Finns

36

60.0–75.0° N

SA000018J

[35]

 Orcadian

16

59.0° N

SA001508O

[36]

 Irish

116

51.0–56.0° N

SA000057M

[35]

 French

28

46.0° N

SA001503J

[36]

 Basque (France)

24

43.0° N

SA001504K

[36]

 Hungarians

92

45.5–48.5° N

SA002023H

[35])

 Italian (Tuscan)

8

43.0° N

SA001507N

[36]

 Italian (Bergamo)

14

46.0° N

SA002255O

[36]

 Sardinian

28

40.0° N

SA001505L

[36]

 Russians (Vologda)

25

61.0° N

SA001510H

[36]

 Russians (Archangel’sk)

34

63.0–64.5° N

SA001530J

[35]

 Chuvash

42

54.5–56.5° N

SA000491O

[35]

 Adygei (Krasnodar)

54

44.0–45° N

SA000017I

[8]

1000 Genomes

 British from England and Scotland (GBR)

91

49.8–59.5° N

  

 Finnish in Finland (FIN)

99

60.0–75.0° N

  

 Iberians in Spain (IBS)

107

36.0–43.5° N

  

 Toscani in Italia (TSI)

107

38.0–47.0° N

  

Total

972

   

East Asians (EAS)

ALFRED

Sample set

n

Latitude

Sample ID#

Data source*

 Ami (Taiwan)

40

22.5–24.0° N

SA000002C

[35]

 Atayal (Taiwan)

41

21.8–25.5° N

SA000021D

[35]

 Dai (China)

10

21.0° N

SA001493R

[36]

 Daur (China)

10

48.0–49.0° N

SA001488V

[36]

 Han (China)

45

36.0–39.0° N

SA001483Q

[36]

 Hezhen (China)

10

47.0–48.0° N

SA001490O

[36]

 Japanese

29

38.0° N

SA002260K

[36]

 Koreans

53

34.5–43.0° N

SA003027M

[35]

 Lahu (China)

10

22.0° N

SA001494S

[36]

 Miao (China)

10

28.0° N

SA001486T

[36]

 Naxi (China)

10

26.0° N

SA001496U

[36]

 Oroqen (China)

10

48.0–53.0° N

SA001487U

[36]

 She (China)

10

27.0° N

SA001495T

[36]

 Tu (China)

10

36.0° N

SA001497V

[36]

 Tujia (China)

10

29.0° N

SA001484R

[36]

 Uygur (China)

10

44.0° N

SA001492Q

[36]

 Xibo (China)

9

43.0–44.0° N

SA001491P

[36]

 Yizu (China)

10

28.0° N

SA001485S

[36]

 Hakka (Taiwan)

43

22.0–35.0° N

SA000003D

[35]

 Mongolian (China)

10

 

SA001489W

[36]

1000 Genomes

 Chinese Dai in Xishuangbanna, China (CDX)

93

21.0–28.0° N

  

 Han Chinese in Beijing, China (CHB)

103

22.0–40.0° N

  

 Han Chinese South, China (CHS)

105

22.0–40.0° N

  

 Japanese in Tokyo, Japan (JPT)

104

30.0–46.0° N

  

Total

795

   

Sub-Saharan Africans (AFR)

ALFRED

Sample set

n

Latitude

Sample ID#

Data source*

 Bantu (SA)

8

22.0–29.0° S

SA001818S

[36]

 Bantu (Kenya)

12

3.0° S

SA001819T

[36]

 San (Nambia)

7

21.0° S

SA001469U

[36]

 Biaka (C. African Republic)

35

4.0° N

SA001465Q

[36]

 Hausa (Nigeria)

39

7.0–18.0° N

SA000100B

[35]

 Ibo (Nigeria)

48

5.0–7.0° N

SA000099S

[35]

 Mbuti (Demographic Republic of the Congo)

19

1.0° N

SA004361O

[35]

 Yoruba (Nigeria)

25

6.0–10.0° N

SA001468T

[36]

 Chagga (Tanzania)

45

2.5–3.5° S

SA000487T

[35]

 Masai (E Africa)

22

1.0° N–6.0° S

SA000854R

[35]

 Sandawe (Tanzania)

39

4.0–7.0° S

SA004366T

[35]

 Zaramo (Tanzania)

39

4.0–11.0° S

SA004367U

[35]

 Mandenka (Senegal)

24

12.0° N

SA001467S

[36]

1000 Genomes

 Esan in Nigeria (ESN)

99

4.0–12.0° N

  

 Gambian in Western Division, Mandinka (GWD)

113

7.0–23.0° N

  

 Yoruba in Ibadan, Nigeria (YRI)

108

6.0–10.0° N

  

 Luhya in Webuye, Kenya (LWK)

99

1.0° N–3.0° S

  

 Mende In Sierra Leone (MSL)

85

4.0–10° N

  

Total

866

   
  1. #Sample IDs relate to only sample sets collated from ALFRED database
  2. *Source of sample sets collated from ALFRED; either original sample sets (i.e. only published on ALFRED by the host (Kidd KK.)) [8], or HGDP-CEPH samples [10]