Table 4 Enriched gene sets identified by GSEA using r-based ranking
Gene sets | |
|---|---|
ABBUD_LIF_UP (T5) [47] | ▲● |
ADIP_VS_PREADIP_DN | ▲ |
AGEING_KIDNEY_SPECIFIC_UP | ▲ |
BASSO_GERMINAL_CENTER_CD40_UP | ▲ |
BROCKE_IL6 | ▲● |
DAVIES_MGUS_MM | ▲ |
IDX_TSA_DN_CLUSTER1 | ▲ |
KRETZSCHMAR_IL6_DIFF | ▲● |
LEE_DENA_UP (T2) [60] | ▲ |
LEE_MYC_E2F1_UP | ▲ |
LIAN_MYELOID_DIFF_GRANULE | ▲ |
LIAN_MYELOID_DIFF_RECEPTORS | ▲● |
LINDSTEDT_DEND_8H_VS_48H_UP | ▲ |
NI2_MOUSE_UP (T2) [40] | ▲● |
RIBAVIRIN_RSV_UP | ▲● |
ROSS_CBF_MYH | ▲ |
TAKEDA_NUP8_HOXA9_3D_UP | ▲ |
AGEING_KIDNEY_UP | ▲\( \nabla \) |
CARIES_PULP_HIGH_UP | ▲\( \nabla \)● |
CARIES_PULP_UP | ▲\( \nabla \)● |
FLECHNER_KIDNEY_TRANSPLANT_REJECTION_UP | ▲\( \nabla \)● |
GALINDO_ACT_UP | ▲\( \nabla \) |
ICHIBA_GVHD (T6) [335] | ▲\( \nabla \)● |
LAL_KO_3MO_UP | ▲\( \nabla \)● |
LAL_KO_6MO_UP | ▲\( \nabla \)● |
NADLER_OBESITY_UP | ▲\( \nabla \)● |
NEMETH_TNF_UP | ▲\( \nabla \) |
TARTE_PC | ▲\( \nabla \)● |
WIELAND_HEPATITIS_B_INDUCED | ▲\( \nabla \) |
AGEING_KIDNEY_SPECIFIC_DN | ▼△● |
BETA_ALANINE_METABOLISM | ▼△● |
BUTANOATE_METABOLISM | ▼△○● |
ELECTRON_TRANSPORT_CHAIN | ▼△● |
FATTY_ACID_DEGRADATION | ▼△ |
FATTY_ACID_METABOLISM (L2) [86] | ▼△● |
FLECHNER_KIDNEY_TRANSPLANT_REJECTION_DN | ▼△● |
HUMAN_MITODB_6_2002 | ▼△● |
IDX_TSA_UP_CLUSTER6 (L2) [166] | ▼△● |
KREBS_TCA_CYCLE | ▼△○● |
LEE_DENA_DN | ▼△● |
LYSINE_DEGRADATION | ▼△ |
MITOCHONDRIA | ▼△● |
MOOTHA_VOXPHOS | ▼△● |
PROPANOATE_METABOLISM | ▼△● |
VALINE_LEUCINE_AND_ISOLEUCINE_DEGRADATION | ▼△○● |
BILE_ACID_BIOSYNTHESIS | ▼ |
GLUTATHIONE_METABOLISM | ▼● |
HCC_SURVIVAL_GOOD_VS_POOR_UP | ▼ |
IDX_TSA_UP_CLUSTER5 | ▼● |
TRYPTOPHAN_METABOLISM | ▼● |
WANG_MLL_CBP_VS_GMP_DN | ▼ |
ADIP_VS_FIBRO_UP (L3) [35] | △ |
ADIP_VS_PREADIP_UP (L3) [36] | △ |
LEE_CIP_UP (L4) [62] | △ |
LEE_MYC_TGFA_DN | △ |
TNFALPHA_ADIP_DN (L2) [59] | △ |
ZMPSTE24_KO_DN (L2) [32] | △ |
IDX_TSA_DN_CLUSTER2 | \( \nabla \) |
MYOD_NIH3T3_DN | \( \nabla \) |
ROS_MOUSE_AORTA_DN | \( \nabla \) |
STEMCELL_COMMON_DN | \( \nabla \) |
TRANSLATION_FACTORS | \( \nabla \) |
TRNA_SYNTHETASES | \( \nabla \) |