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Table 2 Detailed overview of OR genes with damaging missense variants on chromosome 1q

From: Olfactory receptor genes cooperate with protocadherin genes in human extreme obesity

Subject code

Locus

Gene symbol

DNA polymorphism

rs number

Amino acid polymorphism

Observed allele frequency (alleles)

Allele frequency in GON or dbSNP

28

1q23

OR10J1

T/C

rs35634161

M70T

0.983/0.017 (59/1)

0.981/0.019c

13

OR10K2

T/G

rs79869455

L39R

0.983/0.017 (59/1)

0.990/0.010b

11, 12, 13, 14, 16, 19, 21, 28, 30

OR10T2

G/A

rs61818749

C89Y

0.850/0.150 (51/9)

0.909/0.091c

2, 4, 7, 8, 9, 11, 13, 14, 17, 18, 23, 26, 27, 30

OR10Z1

A/C

rs857685

N294T

0.733/0.267 (44/16)

0.764/0.236c

1, 2, 3, 5, 6, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30

1q44

OR2AK2

G/A

rs4478844

V203 M

0.367/0.633 (22/38)

0.384/0.616c

1, 4, 5, 6, 7, 9, 12, 13, 15, 16, 17, 19, 21, 23, 24, 26, 29

OR2G2

T/C

rs10925085

L167P

0.667/0.333 (40/20)

0.597/0.403c

26

OR2G3

C/A

 

A237D

0.983/0.017 (59/1)

 

13

OR2M3

T/A

rs144171858

I289 N

0.983/0.017 (59/1)

0.998/0.002a

1, 24

OR2M5

C/A

rs41304157

A237D

0.967/0.033 (58/2)

0.981/0.019c

30

OR2T11

T/G

rs75010552

M203R

0.967/0.033 (58/2)

0.992/0.008c

13

OR2T2

G/A

rs145665149

G234D

0.983/0.017 (59/1)

0.999/0.001b

13

OR2T3

G/C

rs148805039

G21A

0.983/0.017 (59/1)

0.998/0.002a

3, 4, 6, 7, 8, 9, 10, 11, 13, 17, 19, 21, 25, 26, 28, 29, 30

 

G/A

rs148025314

C132Y

0.817/0.183 (43/17)

0.811/0.189a

8, 19, 25

 

T/C

rs148748995

F183S

0.950/0.050 (57/3)

0.997/0.003a

1, 4, 12, 13, 14, 17, 19, 20, 21, 25, 26, 28, 29

OR2T6

T/G

rs954475

S243A

0.767/0.233 (46/14)

0.852/0.148c

3, 4, 8, 30

OR2T34

G/A

rs147489167

C132Y

0.917/0.083 (55/5)

0.993/0.007a

2, 4, 5, 8, 13, 14, 19, 25, 26, 30

 

T/C

rs150608839

F183S

0.834/0.166 (50/10)

0.896/0.104a

2, 5, 6, 7, 8, 10, 14, 15, 16, 18, 26, 27, 28, 30

OR14C36

G/T

rs28545014

D231Y##

0.700/0.300 (42/18)

0.431/0.569c

3, 4, 6, 8, 10, 11, 22, 30

OR14I1

A/G

rs55871516

Y216C

0.867/0.133 (52/8)

0.868/0.132c

  1. Carriership of missense variants with a predicted damaging effect in olfactory receptor genes on chromosome 1q is shown together with their observed and reported allele frequency
  2. Subject code in italics: PCDH-variant carriers; in roman: non-carriers
  3. ##Genetic association with extreme obesity (P < 0.0001)
  4. aCS-Agilent, b ESP-cohort populations; c Genome of the Netherlands (GON)