Skip to main content

Table 6 Selected biological processes identified in DAVID for differentially expressed target genes (DET)

From: Effect of β-hydroxy-β-methylbutyrate on miRNA expression in differentiating equine satellite cells exposed to hydrogen peroxide

No. Biological processes Number of identified genes List of genes FDR
1 Muscle organ development 17 six1, tiparp, acta1, cav3, cxcl10, col19a1, cxadr, foxp1, fxr1, mapk14, rarb, sgcd, zfand5, tcf12, tagln2, tpm1, zfpm2 8.3E−03
2 Modification-dependent protein catabolic process 27 ube2g1, rnf217, edem3, edem1, otub2, cul3, fbxl19, rnf125, cyld, map1lc3b, rnf11, hectd1, ubr3, ube2h, mid1, hltf, trim63, march3, fem1c, dcun1d1, nedd4, rnf2, trim32, usp47, rnf138, cul4b, usp25 1.4E−01
3 Muscle cell differentiation 11 tbx18, acta1, cav3, cxadr, foxp1,neo1, ntf3, rarb, sort1, syne1, tpm1 2.5E−01
4 Proteolysis involved in cellular catabolic process 27 ube2g1, rnf217, edem3, edem1, otub2, cul3, fbxl19, rnf125, cyld, map1lc3b, rnf11, hectd1, ubr3, ube2h, mid1, hltf, trim63, march3, fem1c, dcun1d1, nedd4, rnf2, trim32, usp47, rnf138, cul4b, 2.8E−01
5 Muscle tissue development 11 six1, tpm1, tiparp, acta1, col19a1,cxadrp2, foxp1, mapk14, rarb, zfand5, zfpm2 3.3E−01
6 Protein catabolic process 27 ube2g1, rnf217, edem3, edem1, otub2, cul3, fbxl19, rnf125, cyld, map1lc3b, rnf11, hectd1, ubr3, ube2h, mid1, hltf, trim63, march3, fem1c, dcun1d1, nedd4, rnf2, trim32, usp47, rnf138, cul4b, usp25 4.8E−01
7 Proteolysis 37 ube2g1, rnf217, edem3, otub2, edem1, rnf125, cul3, fbxl19, cyld, ece1, map1lc3b, rnf11, dpp8, nsf, hectd1, capn6, nrip3, capn7, mmp19, ubr3, ube2h, mid1, hltf, trim63, march3, fem1c, dcun1d1, nedd4, rnf2, trim32, usp47, rnf138, tep1, nln, cul4b, usp25, adamts3 1.6E−00
8 Regulation of apoptosis 29 ier3, cadm1, mcl1, tlr4, sgms1, mcf2l, slc11a2, cul3, map3k7, bdnf, tiam2, sos2, ngfrap1, faim, rarb, ip6k2, fgd4, traf3, rarg, ntf3, arhgef12, pla2g4a, eya1, tnfsf13b, dusp1, ets1, igf2r, sort1, jak2 4.5E−00
9 Positive regulation of cellular biosynthetic process 25 tlr4, abca1, rarb, fam129a, znf423, rarg, epas1, ntf3, npr1, itga2, creb5, arntl, mecom, wwtr1, pla2g4a, ncoa1, sp1, ets1, mapk14, six1, pdgfra, jak2, zfpm2, smarca1, klf4 8.3E−00
10 Positive regulation of cell proliferation 16 nampt, fgf7, itga2, vash2, foxp1, cxcl10, cul3, cd47, vegfc, pla2g4a, tnfsf13b, pdgfra, jak2, mab21l1, tbx18, pggt1b 2.7E−01
11 Positive regulation of inflammatory response 4 jak2, itga2, pla2g4a, tlr4 3.1E−01