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Table 5 Vitamin D-associated variants included in the study

From: Distribution of variants in multiple vitamin D-related loci (DHCR7/NADSYN1, GC, CYP2R1, CYP11A1, CYP24A1, VDR, RXRα and RXRγ) vary between European, East-Asian and Sub-Saharan African-ancestry populations

Gene/lociID numberFixation indexMinor allele frequencyVariant alleleFunction class#
CYP11A1rs116326980.180.35GIntron
 rs20734750.130.38AnearGene-5
CYP24A1rs37875570.130.12CIntron
rs9276500.140.34TIntron
rs9125050.140.39GIntron
rs27629290.150.39TIntron
rs48099560.180.40C*Intron
CYP27A1rs75681960.140.25AIntron
rs46743380.170.25GIntron
rs130135100.180.43GIntron
rs6914140.300.06CIntron
rs6922900.380.11GIntron
CYP2R1rs169306250.140.15G5′ Prime UTR
 rs110233740.170.17CIntron
DHCR7/NADSYN1rs37509970.160.42T*Intron
rs17903250.180.26AIntron
 rs116033300.180.35AIntron
 rs79282490.200.42A*nearGene-5
 rs128004380.160.40G*Intron
 rs79449260.220.35AIntron
 rs37940600.230.35TIntron
 rs122802950.530.05CIntron
GCrs70410.140.38GMissense
rs43642280.140.17GIntron
rs2220470.160.38GIntron
rs37375490.160.10TIntron
rs2220160.170.34A*Intron
rs2220200.170.34T*Intron
rs8430060.190.36GIntron
rs7051170.250.42AIntron
RXRαrs18053430.160.48AIntron
rs18053520.160.47A*Intron
rs108815820.180.38G*Intron
rs31185710.190.48AIntron
rs38187400.200.38T*Intron
rs7315160.430.11AIntron
rs70404340.510.15CIntron
RXRγrs2836950.140.34AIntron
rs120691600.150.14TIntron
rs108000980.160.12AIntron
rs104897450.170.17CIntron
VDRrs8864410.130.23CIntron
rs22833420.130.19CIntron
 rs21073010.160.34TIntron
 rs43340890.170.41G*Intron
 rs45160350.180.18C2KB upstream
  1. *Indicates the variant allele was also the major allele
  2. #Functional class recorded and defined by dpSNP—see www.ncbi.nlm.nih.gov/variation/docs/glossary/